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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015905454.1_cds_XP_016455688.1_49599
CDS Infomation

[gene=LOC107779724] [db_xref=GeneID:107779724] [protein=probable polygalacturonase At1g80170] [protein_id=XP_016455688.1] [location=join(18048..18287,18574..18705,18809..18979,19075..19095,19325..19532,19890..19971,20063..20174,20552..20668,21298..21579)] [gbkey=CDS]
Sequence

ATGGGGGAGCTGAGATCTTCTTACTTCACTTTTTCTTCTTATTATTCCACTTCTGTTTCT
ATTTTGGCATCACTATTATATACTACTATCTATTCGTTCTTGCTTTTCGCAAATGTGAAT
AGTTACCATCCCGTGATTCATCAGTTCCCTACATTGAACAACATAACAGGCAGATCAAAA
ACCCTTATTTATGTGAATGAGTTTGGAGCCAAAGGAGATGGCATAACCGATGACACTAAG
CCGTTTCAAGATGTCTGGAAAATCGCATGTTCTTCACCATTACGACCAAAAATTGTAATC
CCGAGTGGATATTCTTTTCTAGTTCGACCAATTGATTTTGTTGGGCCTTGCCGGTCAAAG
GTGTCTCTATCAATTGCAGGTTCTATTGTAGCGCCGAAAGATCCTCAAGTCTGGGATGGT
TTGAATCCACATAAATGGCTTTATTTCTTTAAAGTGAAATACCTGACTGTAGAAGGAGGA
GGAACAATTAACGGGATGGGCCAGAAATGGTGGGCTAGGTCATGCAAGATTAATACCACC
AATCCTTGTCGACATGCTCCAACAGCAATGACTTTCCACAGATGCAACAATCTGAAAGTG
AGGGACATAAGGATGCTAAATAGTCAACAAATGCATATATCAATTTCTAAGTGCATACAT
GTTGAAGTATCACATCTTATAGTGCAAGCACCTGCTAAGAGCCCTAACACAGATGCAATC
CACTTAAGCTCATCTACACATGTTGGTATCAGAGATAGCAGTATTGGCACAGGAGATGAC
TGTATATCTATAGTGGGCAATTCGTCAAGAATCTTGGTCAAAAACATTGCTTGTGGACCA
GGCCATGGTATAAGCATTGGAAGCTTGGGAAAGTCTAACTCATCGTCGTCTCAAGTGCAC
GATGTCTGTGTTGATGGAGCATATCTTTCCAACACAGAAAATGGTGTGAGGATAAAGACT
TGGCAGGGAGGTAGGGGGTTTGTCAGAAAGATTGCTTTTGCGAACGTGTGGATGGAAAAT
GTGTCAAATCCCATCATAATAGATCAATATTATTGTGATTCTCCACTGGCGTGTCCCAAT
CAGACTTTGGCTATTGGCATTAACAGCGTATCCTTTGTTGGTATTAGAGGGTCTTCAGCA
ACAAAAAATGCAATAACATTTGCCTGTAGTGATAACTCCCCATGTAGAAATCTATATTTG
GAAGATGTTCAACTTGTTTCGTTTTTGGATTTCCCCACAACGTCGTTTTGTTGGAAGGCA
TATGGCTCAACCTCAGGATTAAACAATCCCTCTTCTTGTTTTCCCTCTAGTGAAAGCATT
GTGCAACGGCCCACAGAATTATCCAACTTGAGCAAGTCCATTTGA

Peptide Sequence

PEP ID

XP_016455688.1
PEP Infomation

PREDICTED: probable polygalacturonase At1g80170 [Nicotiana tabacum]
Sequence

MGELRSSYFTFSSYYSTSVSILASLLYTTIYSFLLFANVNSYHPVIHQFPTLNNITGRSK
TLIYVNEFGAKGDGITDDTKPFQDVWKIACSSPLRPKIVIPSGYSFLVRPIDFVGPCRSK
VSLSIAGSIVAPKDPQVWDGLNPHKWLYFFKVKYLTVEGGGTINGMGQKWWARSCKINTT
NPCRHAPTAMTFHRCNNLKVRDIRMLNSQQMHISISKCIHVEVSHLIVQAPAKSPNTDAI
HLSSSTHVGIRDSSIGTGDDCISIVGNSSRILVKNIACGPGHGISIGSLGKSNSSSSQVH
DVCVDGAYLSNTENGVRIKTWQGGRGFVRKIAFANVWMENVSNPIIIDQYYCDSPLACPN
QTLAIGINSVSFVGIRGSSATKNAITFACSDNSPCRNLYLEDVQLVSFLDFPTTSFCWKA
YGSTSGLNNPSSCFPSSESIVQRPTELSNLSKSI

Transcript Sequence

Gene sequence data has not been registered.